Genome / Transcriptome

1 Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. (2022)

Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805

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Reference

Baruah I.K., Ali S.S., Shao J., Lary D. & Bailey B.A. 2022

Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection. Frontiers in Plant Science 12: 780805

Notes

Treated plants were inoculated with zoospores of Phytophthora palmivora and monitored for disease symptom development out to 48 hours. RNA-Seq was carried out on samples 24 h post Phytophthora palmivora inoculation.

 DOI: 10.3389/fpls.2021.780805

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 Accession Data  Project Data

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BioProject: PRJNA785999  NCBI   ENA 

Focus of study: disease reaction

Library Source: transcriptomic

BioSamples: 13 3 clones | Runs: 13 | Experiments: 13 | SampleSource: 1
 

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2 CPCRI (2021)

Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).

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CPCRI 2021

Transcriptome analysis of cocoa pods, infected by Phytophthora palmivora (black pod disease condition).

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 Accession Data  Project Data

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BioProject: PRJNA604260  NCBI   ENA 

Focus of study: disease reaction

Library Source: transcriptomic

BioSamples: 3 | Runs: 3 | Experiments: 3 | SampleSource: 1
 

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3 Guiltinan, Mark (2019)

Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI

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Reference

Guiltinan, Mark 2019

Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI

Notes

A project to establish a new scientific approach for use with perennial crop plants to identify candidate loci for disease resistance using Theobroma cacao. Leaf samples were collected from the La Montaña field site at the CATIE field station in Turrialba, Costa Rica. The study focused on four genetic groups (Guiana, Iquitos, Marañon, and Nanay) and variation in resistance to Phytophthora.

Last updated: November, 2022

 plantscience.psu.edu/…

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 Disease  Population  Accession Data  Project Data

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BioProject: PRJNA558793  NCBI   ENA 

Focus of study: disease reaction

Library Source: genomic

BioSamples: 31 31 clones | Runs: 134 | Experiments: 134 | SampleSource: 1
 

Library Source: transcriptomic

BioSamples: 31 31 clones | Runs: 31 | Experiments: 31 | SampleSource: 1
 

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1 AMAZ 12   View

2 AMAZ 15 /15   View

3 CCN 51   View

4 COCA 3370 /5 [CHA]   View

5 ELP 37 A   View

6 GU 123 /V   View

7 GU 195 /V   View

8 GU 257 /E   View

9 ICS 1   View

10 IMC 31   View

11 IMC 57   View

12 IMC 60   View

13 IMC 105   View

14 KER 1-L   View

15 KER 6   View

16 NA 33   View

17 NA 34   View

18 NA 70   View

19 NA 246   View

20 NA 710   View

21 NA 807   View

22 NA 916   View

23 OYA 2 B   View

24 PA 13 [PER]   View

25 PA 16 [PER]   View

26 PA 71 [PER]   View

27 PA 81 [PER]   View

28 PA 107 [PER]   View

29 PA 279 [PER]   View

30 PA 299 [PER]   View

31 PINA 1   View  Synonyms: PINA

32 POUND 7   View

33 SPEC 54 /1   View